3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01287

Details:

PFam ID : PF01287

PFam Domain Description : Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 326

Average sequence length: 65.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01287	IF5A_NATPD_69_124	51.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01287	Q01GB7_OSTTA_1_53	80

Sequence based PCA Plot of the family - PF01287 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay