3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01286

Details:

PFam ID : PF01286

PFam Domain Description : XPA protein N-terminal

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 46

Average sequence length: 32.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01286	E5SUM6_TRISP_124_154	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01286	E5SUM6_TRISP_124_154	100

Sequence based PCA Plot of the family - PF01286 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay