3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01285

Details:

PFam ID : PF01285

PFam Domain Description : TEA/ATTS domain family

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 175

Average sequence length: 262.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01285	A7RMG8_NEMVE_1_83	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01285	Q4PAM8_USTMA_360_725	98.2

Sequence based PCA Plot of the family - PF01285 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=163 Length=8
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay