3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01278

Details:

PFam ID : PF01278

PFam Domain Description : Omptin family

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 68

Average sequence length: 232.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01278	C4S6Q5_YERBE_6_96	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01278	E3H840_ILYPC_37_335	100

Sequence based PCA Plot of the family - PF01278 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=89 Length=8
Motif2 Start=3 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay