3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01277

Details:

PFam ID : PF01277

PFam Domain Description : Oleosin

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 201

Average sequence length: 106.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01277	B5TT88_COCNU_1_55	35.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01277	A9RQ78_PHYPA_22_135	98.5

Sequence based PCA Plot of the family - PF01277 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay