3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01276

Details:

PFam ID : PF01276

PFam Domain Description : Orn/Lys/Arg decarboxylase, major domain

Number of Sequence in 50% Dataset : 126

Number of Sequence in Full Dataset : 762

Average sequence length: 332.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01276	C0AX42_9ENTR_4_285	78.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01276	C4L5C0_EXISA_312_376	100

Sequence based PCA Plot of the family - PF01276 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay