3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01275

Details:

PFam ID : PF01275

PFam Domain Description : Myelin proteolipid protein (PLP or lipophilin)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 74

Average sequence length: 196.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01275	C3YS97_BRAFL_4_205	29.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01275	C3YSA0_BRAFL_14_249	100

Sequence based PCA Plot of the family - PF01275 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=1 Length=18
Motif3 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay