3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01274

Details:

PFam ID : PF01274

PFam Domain Description : Malate synthase

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 649

Average sequence length: 550.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01274	C8XK14_NAKMY_272_417	52

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01274	C8XK14_NAKMY_272_417	99.5

Sequence based PCA Plot of the family - PF01274 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=44

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay