3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01273

Details:

PFam ID : PF01273

PFam Domain Description : LBP / BPI / CETP family, N-terminal domain

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 206

Average sequence length: 165.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01273	O17781_CAEEL_71_252	40.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01273	A7J149_PIG_43_215	99.5

Sequence based PCA Plot of the family - PF01273 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay