3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01272

Details:

PFam ID : PF01272

PFam Domain Description : Transcription elongation factor, GreA/GreB, C-term

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 1880

Average sequence length: 77.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01272	F0RQG7_DEIPM_74_162	38.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01272	D4ZJR8_SHEVD_86_182	100

Sequence based PCA Plot of the family - PF01272 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=11
Motif2 Start=2 Length=11
Motif3 Start=23 Length=11
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay