3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01270

Details:

PFam ID : PF01270

PFam Domain Description : Glycosyl hydrolases family 8

Number of Sequence in 50% Dataset : 122

Number of Sequence in Full Dataset : 354

Average sequence length: 318.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01270	C6K6G6_9GAMM_1_142	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01270	O52730_9BACI_21_427	100

Sequence based PCA Plot of the family - PF01270 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay