3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01269

Details:

PFam ID : PF01269

PFam Domain Description : Fibrillarin-like archaeal protein

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 209

Average sequence length: 206.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01269	D2V9H2_NAEGR_81_263	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01269	Q2PET2_TRIPR_241_471	100

Sequence based PCA Plot of the family - PF01269 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=74 Length=8
Motif3 Start=100 Length=8
Motif4 Start=46 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay