3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01268

Details:

PFam ID : PF01268

PFam Domain Description : Formate--tetrahydrofolate ligase

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 1281

Average sequence length: 423.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01268	E3ELM8_BIFBS_321_504	48.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01268	E4F7M4_PROAC_3_249	99.6

Sequence based PCA Plot of the family - PF01268 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=13 Length=8
Motif3 Start=64 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay