3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01267

Details:

PFam ID : PF01267

PFam Domain Description : F-actin capping protein alpha subunit

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 162

Average sequence length: 239.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01267	D8M3I4_BLAHO_3_137	77.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01267	D7FYI5_ECTSI_19_295	100

Sequence based PCA Plot of the family - PF01267 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=207 Length=8
Motif2 Start=221 Length=8
Motif3 Start=279 Length=11
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay