3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01266

Details:

PFam ID : PF01266

PFam Domain Description : FAD dependent oxidoreductase

Number of Sequence in 50% Dataset : 0

Number of Sequence in Full Dataset : 9694

Average sequence length: 329.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01266	CCHL_SCHPO_1_368	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01266	B9PAC2_POPTR_42_106	55

Sequence based PCA Plot of the family - PF01266 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay