3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01265

Details:

PFam ID : PF01265

PFam Domain Description : Cytochrome c/c1 heme lyase

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 243

Average sequence length: 241.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01265	CCHL_SCHPO_1_368	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01265	E6ZWP9_9BASI_47_360	100

Sequence based PCA Plot of the family - PF01265 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=116 Length=17
Motif2 Start=145 Length=8
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay