3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01264

Details:

PFam ID : PF01264

PFam Domain Description : Chorismate synthase

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 1216

Average sequence length: 325.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01264	D4KNK4_9FIRM_1_67	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01264	E6SM13_THEM7_3_469	100

Sequence based PCA Plot of the family - PF01264 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=175 Length=8
Motif2 Start=1 Length=11
Motif3 Start=198 Length=23
Motif4 Start=440 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay