3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01263

Details:

PFam ID : PF01263

PFam Domain Description : Aldose 1-epimerase

Number of Sequence in 50% Dataset : 717

Number of Sequence in Full Dataset : 2428

Average sequence length: 282.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01263	A3XJ71_LEEBM_51_207	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01263	E7NAQ5_9ACTO_5_162	99.9

Sequence based PCA Plot of the family - PF01263 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=55 Length=8
Motif3 Start=76 Length=8
Motif4 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay