3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01262

Details:

PFam ID : PF01262

PFam Domain Description : Alanine dehydrogenase/PNT, C-terminal domain

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 1268

Average sequence length: 151.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01262	E3IZ72_FRASU_172_250	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01262	E9Q8F2_MOUSE_208_327	99.5

Sequence based PCA Plot of the family - PF01262 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=47 Length=8
Motif2 Start=38 Length=8
Motif3 Start=29 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay