3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01261

Details:

PFam ID : PF01261

PFam Domain Description : Xylose isomerase-like TIM barrel

Number of Sequence in 50% Dataset : 1334

Number of Sequence in Full Dataset : 5532

Average sequence length: 209.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01261	Q5B683_EMENI_201_340	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01261	F0M6C0_ARTPP_44_284	99.7

Sequence based PCA Plot of the family - PF01261 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=112 Length=8
Motif3 Start=233 Length=8
Motif4 Start=192 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay