3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01256

Details:

PFam ID : PF01256

PFam Domain Description : Carbohydrate kinase

Number of Sequence in 50% Dataset : 326

Number of Sequence in Full Dataset : 1551

Average sequence length: 239.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01256	E2WMP8_MYCTU_152_279	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01256	F2AU04_RHOBA_1_62	100

Sequence based PCA Plot of the family - PF01256 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=18
Motif2 Start=55 Length=8
Motif3 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay