3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01253

Details:

PFam ID : PF01253

PFam Domain Description : Translation initiation factor SUI1

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 767

Average sequence length: 79.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01253	C5KPQ1_9ALVE_58_113	15

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01253	E1FSZ8_LOALO_15_75	100

Sequence based PCA Plot of the family - PF01253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=1 Length=8
Motif3 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay