3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01244

Details:

PFam ID : PF01244

PFam Domain Description : Membrane dipeptidase (Peptidase family M19)

Number of Sequence in 50% Dataset : 231

Number of Sequence in Full Dataset : 947

Average sequence length: 312.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01244	A9Q1D9_HYPVI_16_224	93.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01244	A6G0T3_9DELT_305_481	100

Sequence based PCA Plot of the family - PF01244 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=49 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay