3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01237

Details:

PFam ID : PF01237

PFam Domain Description : Oxysterol-binding protein

Number of Sequence in 50% Dataset : 194

Number of Sequence in Full Dataset : 794

Average sequence length: 319.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01237	Q017D2_OSTTA_39_285	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01237	C1G1D8_PARBD_18_131	100

Sequence based PCA Plot of the family - PF01237 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=239 Length=8
Motif3 Start=268 Length=11
Motif4 Start=294 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay