3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01234

Details:

PFam ID : PF01234

PFam Domain Description : NNMT/PNMT/TEMT family

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 97

Average sequence length: 217.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01234	E1GP09_LOALO_3_90	76.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01234	E5SIM8_TRISP_2_277	100

Sequence based PCA Plot of the family - PF01234 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay