3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01233

Details:

PFam ID : PF01233

PFam Domain Description : Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 157

Average sequence length: 147.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01233	Q0J1M9_ORYSJ_7_68	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01233	E1F0C7_GIAIA_25_197	100

Sequence based PCA Plot of the family - PF01233 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=142 Length=8
Motif2 Start=96 Length=8
Motif3 Start=16 Length=11
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay