3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01232

Details:

PFam ID : PF01232

PFam Domain Description : Mannitol dehydrogenase Rossmann domain

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 856

Average sequence length: 149.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01232	E7SES6_SHIDY_16_80	51.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01232	E7SES6_SHIDY_16_80	97.8

Sequence based PCA Plot of the family - PF01232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=159 Length=8
Motif2 Start=106 Length=11
Motif3 Start=2 Length=14
Motif4 Start=170 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay