3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01231

Details:

PFam ID : PF01231

PFam Domain Description : Indoleamine 2,3-dioxygenase

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 233

Average sequence length: 344.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01231	F0YEC4_9STRA_814_939	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01231	Q4P835_USTMA_62_465	100

Sequence based PCA Plot of the family - PF01231 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=162 Length=8
Motif2 Start=184 Length=11
Motif3 Start=151 Length=8
Motif4 Start=5 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay