3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01230

Details:

PFam ID : PF01230

PFam Domain Description : HIT domain

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 2537

Average sequence length: 95.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01230	B7FI37_MEDTR_30_106	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01230	D5Z2H1_MYCTU_43_109	99.8

Sequence based PCA Plot of the family - PF01230 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=46 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay