3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01229

Details:

PFam ID : PF01229

PFam Domain Description : Glycosyl hydrolases family 39

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 248

Average sequence length: 353.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01229	C6LHW7_9FIRM_266_516	94.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01229	A7RUK1_NEMVE_22_329	100

Sequence based PCA Plot of the family - PF01229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=279 Length=8
Motif2 Start=164 Length=8
Motif3 Start=22 Length=11
Motif4 Start=90 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay