3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01228

Details:

PFam ID : PF01228

PFam Domain Description : Glycine radical

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 632

Average sequence length: 100.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01228	B8FMK7_DESAA_702_819	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01228	B8FMK7_DESAA_702_819	95.5

Sequence based PCA Plot of the family - PF01228 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=30
Motif2 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay