3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01227

Details:

PFam ID : PF01227

PFam Domain Description : GTP cyclohydrolase I

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 1352

Average sequence length: 82.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01227	A9GEC7_SORC5_85_170	35

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01227	A9GEC7_SORC5_85_170	100

Sequence based PCA Plot of the family - PF01227 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=8
Motif2 Start=38 Length=8
Motif3 Start=64 Length=8
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay