3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01226

Details:

PFam ID : PF01226

PFam Domain Description : Formate/nitrite transporter

Number of Sequence in 50% Dataset : 138

Number of Sequence in Full Dataset : 773

Average sequence length: 240.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01226	D2VRK1_NAEGR_228_400	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01226	Q8EVD8_MYCPE_29_326	100

Sequence based PCA Plot of the family - PF01226 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=34 Length=8
Motif3 Start=13 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay