3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01225

Details:

PFam ID : PF01225

PFam Domain Description : Mur ligase family, catalytic domain

Number of Sequence in 50% Dataset : 204

Number of Sequence in Full Dataset : 3849

Average sequence length: 85.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01225	E1MQH0_9GAMM_22_160	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01225	Q9RWA1_DEIRA_20_134	64

Sequence based PCA Plot of the family - PF01225 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=35
Motif2 Start=64 Length=8
Motif3 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay