3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01223

Details:

PFam ID : PF01223

PFam Domain Description : DNA/RNA non-specific endonuclease

Number of Sequence in 50% Dataset : 201

Number of Sequence in Full Dataset : 863

Average sequence length: 204.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01223	E6QVK9_9ZZZZ_5_83	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01223	C3ZRM5_BRAFL_2225_2315	97.5

Sequence based PCA Plot of the family - PF01223 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=52 Length=8
Motif3 Start=32 Length=8
Motif4 Start=90 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay