3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01222

Details:

PFam ID : PF01222

PFam Domain Description : Ergosterol biosynthesis ERG4/ERG24 family

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 389

Average sequence length: 356.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01222	D2A2T7_TRICA_254_301	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01222	Q1AB77_9HYPO_1_161	100

Sequence based PCA Plot of the family - PF01222 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=123 Length=8
Motif3 Start=71 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay