3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01221

Details:

PFam ID : PF01221

PFam Domain Description : Dynein light chain type 1

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 403

Average sequence length: 85.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01221	C5LPM3_9ALVE_18_84	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01221	Q4DRL3_TRYCR_42_155	100

Sequence based PCA Plot of the family - PF01221 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=45 Length=8
Motif2 Start=77 Length=8
Motif3 Start=7 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay