3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01220

Details:

PFam ID : PF01220

PFam Domain Description : Dehydroquinase class II

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 989

Average sequence length: 138.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01220	A0QVD1_MYCS2_32_179	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01220	A0QVD1_MYCS2_32_179	100

Sequence based PCA Plot of the family - PF01220 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=5 Length=8
Motif2 Start=132 Length=8
Motif3 Start=95 Length=14
Motif4 Start=50 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay