3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01218

Details:

PFam ID : PF01218

PFam Domain Description : Coproporphyrinogen III oxidase

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 669

Average sequence length: 261.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01218	A0ZEV7_NODSP_25_68	82.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01218	A0CDD9_PARTE_8_323	100

Sequence based PCA Plot of the family - PF01218 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=40 Length=11
Motif2 Start=11 Length=17
Motif3 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay