3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01217

Details:

PFam ID : PF01217

PFam Domain Description : Clathrin adaptor complex small chain

Number of Sequence in 50% Dataset : 105

Number of Sequence in Full Dataset : 904

Average sequence length: 133.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01217	Q4RCJ2_TETNG_1_69	50.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01217	E2QRI9_HUMAN_1_63	100

Sequence based PCA Plot of the family - PF01217 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay