3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01216

Details:

PFam ID : PF01216

PFam Domain Description : Calsequestrin

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 46

Average sequence length: 280.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01216	A7SY15_NEMVE_210_365	22.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01216	B3RTQ7_TRIAD_12_249	97.7

Sequence based PCA Plot of the family - PF01216 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay