3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01215

Details:

PFam ID : PF01215

PFam Domain Description : Cytochrome c oxidase subunit Vb

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 192

Average sequence length: 116.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01215	B2WL26_PYRTR_134_199	34.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01215	D0NKH5_PHYIT_7_123	100

Sequence based PCA Plot of the family - PF01215 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=1 Length=8
Motif3 Start=47 Length=8
Motif4 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay