3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01214

Details:

PFam ID : PF01214

PFam Domain Description : Casein kinase II regulatory subunit

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 291

Average sequence length: 177.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01214	Q4RA82_TETNG_1_47	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01214	E4X3E3_OIKDI_6_204	100

Sequence based PCA Plot of the family - PF01214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=146 Length=14
Motif2 Start=1 Length=8
Motif3 Start=132 Length=8
Motif4 Start=100 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay