3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01213

Details:

PFam ID : PF01213

PFam Domain Description : Adenylate cyclase associated (CAP) N terminal

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 197

Average sequence length: 269.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01213	Q24I68_TETTH_7_230	76.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01213	A8Q1A9_MALGO_8_365	100

Sequence based PCA Plot of the family - PF01213 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=148 Length=8
Motif2 Start=50 Length=8
Motif3 Start=261 Length=8
Motif4 Start=188 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay