3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01212

Details:

PFam ID : PF01212

PFam Domain Description : Beta-eliminating lyase

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 1263

Average sequence length: 290.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01212	D8FA61_9DELT_1_67	64.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01212	BIOF_PROMH_80_208	99.5

Sequence based PCA Plot of the family - PF01212 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=11
Motif2 Start=55 Length=8
Motif3 Start=101 Length=8
Motif4 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay