3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01210

Details:

PFam ID : PF01210

PFam Domain Description : NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

Number of Sequence in 50% Dataset : 234

Number of Sequence in Full Dataset : 1717

Average sequence length: 151.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01210	B3T0P4_9ZZZZ_3_114	81.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01210	A9FGY2_SORC5_47_150	100

Sequence based PCA Plot of the family - PF01210 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=118 Length=8
Motif2 Start=60 Length=8
Motif3 Start=156 Length=11
Motif4 Start=3 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay