3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01209

Details:

PFam ID : PF01209

PFam Domain Description : ubiE/COQ5 methyltransferase family

Number of Sequence in 50% Dataset : 218

Number of Sequence in Full Dataset : 1257

Average sequence length: 220.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01209	Q9WWK7_SYNP2_20_113	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01209	Q7V8Q7_PROMM_1_85	100

Sequence based PCA Plot of the family - PF01209 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=154 Length=11
Motif2 Start=11 Length=26
Motif3 Start=65 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay