3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01208

Details:

PFam ID : PF01208

PFam Domain Description : Uroporphyrinogen decarboxylase (URO-D)

Number of Sequence in 50% Dataset : 338

Number of Sequence in Full Dataset : 1417

Average sequence length: 311.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01208	B1ZXE1_OPITP_82_335	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01208	B8F9Y0_DESAA_32_123	100

Sequence based PCA Plot of the family - PF01208 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=114 Length=8
Motif3 Start=2 Length=8
Motif4 Start=202 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay