3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01207

Details:

PFam ID : PF01207

PFam Domain Description : Dihydrouridine synthase (Dus)

Number of Sequence in 50% Dataset : 301

Number of Sequence in Full Dataset : 2760

Average sequence length: 286.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01207	A7RQK6_NEMVE_118_266	80.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01207	C6LXY4_GIAIB_265_403	100

Sequence based PCA Plot of the family - PF01207 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=51 Length=8
Motif2 Start=2 Length=29

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay