3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01205

Details:

PFam ID : PF01205

PFam Domain Description : Uncharacterized protein family UPF0029

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 991

Average sequence length: 106.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01205	E2LV53_MONPE_9_67	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01205	B9TEZ0_RICCO_15_65	100

Sequence based PCA Plot of the family - PF01205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=51 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay